One Codex

Changelog

Follow up on the latest improvements and updates.

RSS

new

improved

fixed

Workflow run descriptions, html previews, various visual updates

New
  • Users can now add an optional description (up to 250 characters) when launching custom workflow runs, from the "confirm-run" page. Descriptions appear in the analysis dropdown, workflow runs dashboard (searchable), and workflow run details page.
  • It is now possible to preview .html files that are outputs from workflows.
Improved
  • Added full-name tooltip on the Run Workflows sample list, allowing users to see the sample's full name if the name is long and truncated.
  • Restored spacing between buttons on the app.onecodex.com/workflows page.
Fixed
  • Updated the save button dropdown to only save when the main button is clicked, not when selecting options from the dropdown menu.

improved

Bigger exports

Improved
  • We've increased the number of samples for which classification results can be exported.

improved

Classification result export generation

Improved
  • We've extended the allowed generation time of classification results exports, to prevent timeouts for large batches of samples.

new

Workflow editor recent run panel

New
  • Added a new right-hand panel on Workflow editor pages. This panel shows recent runs using that workflow, including sample name, status, and run duration. It also provides a link to view logs of recent runs; this will open in a new modal to view without leaving the page. A rerun button is also available. This is only enabled if any edits to the workflow job have been made and saved since the previous run.

improved

API

API analysis subtype responses

Improved
  • API analysis subtype responses, such as classifications, now include
    updated_at
    timestamp.

new

improved

fixed

API

API jobs updates, workflow colours, documents, and exports

New
  • API now includes
    /jobs
    creation and
    /jobs/{id}
    update endpoints.
  • Workflows users can now select custom colors for their workflow jobs with a color picker.
Fixed
Improved
  • We've optimized export of excel files of results from multiple sample classifications.

new

fixed

Workflow HTML viewer, status on favicon, and asset list fix

New
  • Added HTML file viewer for workflow output files.
  • Workflow status badge now dynamically displays on the browser page/tab icon, providing real-time visual feedback, even for browser tabs that are not currently being viewed.
Fixed
  • Fixed duplicate display of assets on asset dropdown menu on workflow editor page.

new

improved

API

Workflow Asset updates, classification result loading

New
  • .tar.gz
    assets now have their contents automatically indexed. Contents can now be viewed from the app.onecodex.com/workflows/assets page.
  • Assets API moved out of experimental status: the Assets API is now generally available and no longer requires the
    X-OneCodex-Api-Experimental
    header.
Improved
  • Classification results should now load with reduced timeouts.
  • Asset deletion now includes more validation to prevent deletion of assets in use by analysis jobs.

new

fixed

API

Workflow endpoints, default arguments

New
  • Added API endpoints for WorkflowRun at
    /api/v1/workflows
    , matching existing
    /api/v1/analyses
    type patterns.
  • Workflow results: Arguments with default values now hidden by default, with a "Show Defaults" toggle for cleaner display.
Fixed
  • Fixed various display, button and menu issues.

new

API

Canceling workflows, results URIs, and asset information

New
  • Users can now cancel in-progress custom workflow runs if they initiated the run. Users with admin/editor/owner permissions in their organization can also cancel in-progress analyses of published custom workflows of published.
  • Added
    results_uri
    field to classification API responses, allowing direct download of results without going through the API
  • Assets endpoint now includes file size information in responses.
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