New
We have released v0.18.0 for the onecodex library. This includes the following updates:
- Adds ocx.FunctionalProfiles to fetch functional analyses results
- Adds SampleCollection.to_classification_df()andSampleCollection.to_functional_df()methods to return classification or functional results as DataFrames
- Adds option to omit taxonomic labels from plot mappings
- Ensures singleton FASTQ filenames follow the same format as chunked uploads (Oxford Nanopore)
- We fixed an issue with onecodex login requiring an API key for certain accounts. Users should now be able to login via the onecodex CLI without providing their API key in the login command.
Improved
- Functional runs have been promoted to a full v1 API resource, and are no longer restricted to the experimental flag.
- You can now set default values for workflow arguments on workflow creation/edit. Note that this is not currently permitted for arguments of type sample,assembly, orgenome.
Fixed
- For users in a One Codex Organization, we've fixed a bug that prevented inviting users to organizations if their email casing differed from the user's registered email.