New
- Any custom Workflows that use dependencies can now have their dependencies overridden at the time of launch via the API. See the dependenciesproperty in the jobs schema. If overriding a dependency, the run you specify must already exist, and be run on the same sample as you are trying to launch the child workflow on. The dependency run does not have to be completed yet. As with other dependencies, overriding dependencies cannot be in a draft state if the child task is in a published state.
Improved
- Exporting the long-format results table for samples previously provided "Relative Abundance" in column I, which was the abundance estimate at species level. This did not provide abundance sums at higher taxonomic ranks. We have since updated the long-format export to now provide "Abundance with Children" instead. This provides not only abundances at species level, but also the sum at higher taxonomic ranks.
- When viewing alignments that have been run for a sample, we now display the genome's name and unique ID on the alignment overview card. This should allow users to distinguish between alignments run against different assemblies for similar taxa.
- Sorting samples by date will now sort completed sequencing samples based on the date that they completed. Any in-progress sequencing samples will still be sorted by the date that the sample was registered or arrived at the lab if not registered.