Client library v0.19.0 released

The

onecodex

client library has a new release - v0.19.0. Details here.

Added

Changed

Upgrades Altair to 5.5.0
Upgrades scikit-bio to 0.7.0. IMPORTANT: This changes the log base used in Shannon alpha diversity calculations from base 2 to
e
(natural log)
Upgrades urllib3 to >=2.5.0
Modernizes packaging and tooling by migrating to
pyproject.toml
,
uv
, and
ruff
Updates
pytest
to fail on warnings
Replaces Potion-Client resources with Pydantic v2 models
Changes
metric=auto
behavior based on the number of classification results with abundance estimates

Fixed

Fixes
SampleCollection
metadata fetching to only match canonical ranks
Fixes issue when plotting fields that look like JavaScript paths (e.g.
field.name
or
field[name]
)
Fixes various documentation issues

Removed